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sSteTig4.hap1

Organism name:
Stegostoma tigrinum (sharks & rays)
Isolate:
sSteTig4
Sex:
male
BioSample:
SAMN35823397
BioProject:
PRJNA986595
Submitter:
Vertebrate Genomes Project
Date:
2023/08/08
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_030684315.1 (latest)
RefSeq assembly accession:
GCF_030684315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAUUDQ01
Assembly method:
Hifiasm + Hi-C phasing v. 0.16.1 + galaxy3; yahs v. 1.2a.2 + galaxy0; Bionano Solve v. 3.7.0 + galaxy0
Expected final version:
no
Genome coverage:
48.69x
Sequencing technology:
PacBio Sequel II HiFi; Arima Hi-C v2; Bionano Genomics DLS

IDs: 18105501 [UID] 46262848 [GenBank] 46506628 [RefSeq]

See Genome Information for Stegostoma tigrinum

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,198,515,386
Total ungapped length3,181,408,905
Gaps between scaffolds0
Number of scaffolds835
Scaffold N5079,021,053
Scaffold L5014
Number of contigs1,994
Contig N506,162,596
Contig L50136
Total number of chromosomes and plasmids51
Number of component sequences (WGS or clone)835

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030684325.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM060509.1=NC_081354.10
Chromosome 2CM060510.1=NC_081355.10
Chromosome 3CM060511.1=NC_081356.10
Chromosome 4CM060512.1=NC_081357.10
Chromosome 5CM060513.1=NC_081358.10
Chromosome 6CM060514.1=NC_081359.12
Chromosome 7CM060515.1=NC_081360.10
Chromosome 8CM060516.1=NC_081361.10
Chromosome 9CM060517.1=NC_081362.10
Chromosome 10CM060518.1=NC_081363.10
Chromosome 11CM060519.1=NC_081364.10
Chromosome 12CM060520.1=NC_081365.10
Chromosome 13CM060521.1=NC_081366.11
Chromosome 14CM060522.1=NC_081367.10
Chromosome 15CM060523.1=NC_081368.10
Chromosome 16CM060524.1=NC_081369.10
Chromosome 17CM060525.1=NC_081370.11
Chromosome 18CM060526.1=NC_081371.10
Chromosome 19CM060527.1=NC_081372.10
Chromosome 20CM060528.1=NC_081373.10
Chromosome 21CM060529.1=NC_081374.10
Chromosome 22CM060530.1=NC_081375.10
Chromosome 23CM060531.1=NC_081376.10
Chromosome 24CM060532.1=NC_081377.14
Chromosome 25CM060533.1=NC_081378.10
Chromosome 26CM060534.1=NC_081379.10
Chromosome 27CM060535.1=NC_081380.10
Chromosome 28CM060536.1=NC_081381.10
Chromosome 29CM060537.1=NC_081382.10
Chromosome 30CM060538.1=NC_081383.12
Chromosome 31CM060539.1=NC_081384.10
Chromosome 32CM060540.1=NC_081385.10
Chromosome 33CM060541.1=NC_081386.10
Chromosome 34CM060542.1=NC_081387.10
Chromosome 35CM060543.1=NC_081388.11
Chromosome 36CM060544.1=NC_081389.11
Chromosome 37CM060545.1=NC_081390.10
Chromosome 38CM060546.1=NC_081391.10
Chromosome 39CM060547.1=NC_081392.10
Chromosome 40CM060548.1=NC_081393.10
Chromosome 41CM060549.1=NC_081394.10
Chromosome 42CM060550.1=NC_081395.10
Chromosome 43CM060551.1=NC_081396.10
Chromosome 44CM060552.1=NC_081397.11
Chromosome 45CM060553.1=NC_081398.10
Chromosome 46CM060554.1=NC_081399.10
Chromosome 47CM060555.1=NC_081400.10
Chromosome 48CM060556.1=NC_081401.10
Chromosome 49CM060557.1=NC_081402.10
Chromosome 50CM060558.1=NC_081403.10
Chromosome XCM060559.1=NC_081404.10
unplacedn/an/an/a771

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,198,515,3868353,181,408,90579,021,0531,1590
Chromosome 1Assembled molecule194,051,8631193,550,261194,051,863420
Chromosome 2Assembled molecule163,087,0181162,079,676163,087,018340
Chromosome 3Assembled molecule139,723,9011136,865,341139,723,901240
Chromosome 4Assembled molecule132,187,6551132,012,515132,187,655410
Chromosome 5Assembled molecule130,639,7041130,195,832130,639,704350
Chromosome 6AllAssembled moleculeUnlocalized scaffolds116,699,288114,815,0611,884,227312115,841,367113,957,1401,884,227114,815,061114,815,0611,355,14536360000
Chromosome 7Assembled molecule108,378,5071107,996,225108,378,507260
Chromosome 8Assembled molecule104,074,4511103,787,427104,074,451220
Chromosome 9Assembled molecule99,257,341198,759,58399,257,341290
Chromosome 10Assembled molecule96,416,223195,817,00296,416,223300
Chromosome 11Assembled molecule90,588,584190,008,85990,588,584290
Chromosome 12Assembled molecule82,076,947181,849,92382,076,947210
Chromosome 13AllAssembled moleculeUnlocalized scaffolds80,895,31679,394,0551,501,26121180,798,37079,297,1091,501,26179,394,05579,394,0551,501,26114140000
Chromosome 14Assembled molecule79,021,053178,922,13779,021,053130
Chromosome 15Assembled molecule74,877,592174,838,82174,877,592100
Chromosome 16Assembled molecule68,031,557167,705,25368,031,557190
Chromosome 17AllAssembled moleculeUnlocalized scaffolds66,151,23664,382,3781,768,85821165,927,43064,158,5721,768,85864,382,37864,382,3781,768,85822220000
Chromosome 18Assembled molecule63,455,393163,358,87963,455,393100
Chromosome 19Assembled molecule62,290,513162,048,83362,290,513180
Chromosome 20Assembled molecule58,320,203158,134,22658,320,203170
Chromosome 21Assembled molecule57,533,523157,254,13257,533,523230
Chromosome 22Assembled molecule57,346,689156,762,27357,346,689160
Chromosome 23Assembled molecule55,312,909155,124,56155,312,909190
Chromosome 24AllAssembled moleculeUnlocalized scaffolds54,732,52947,941,4956,791,03451454,653,84047,862,8066,791,03447,941,49547,941,4951,830,165440000
Chromosome 25Assembled molecule54,409,722154,229,77954,409,722210
Chromosome 26Assembled molecule51,515,431151,014,59751,515,431170
Chromosome 27Assembled molecule50,098,721149,653,58150,098,721330
Chromosome 28Assembled molecule49,913,908149,700,99649,913,908140
Chromosome 29Assembled molecule48,423,702148,155,02048,423,702290
Chromosome 30AllAssembled moleculeUnlocalized scaffolds46,911,24646,341,838569,40831246,668,78846,099,380569,40846,341,83846,341,838292,24920200000
Chromosome 31Assembled molecule41,834,832141,803,57941,834,832180
Chromosome 32Assembled molecule40,258,820139,776,80740,258,820140
Chromosome 33Assembled molecule37,173,823137,013,59037,173,823130
Chromosome 34Assembled molecule31,945,831131,790,73331,945,831180
Chromosome 35AllAssembled moleculeUnlocalized scaffolds29,741,82025,358,2964,383,52421129,700,96225,317,4384,383,52425,358,29625,358,2964,383,52411110000
Chromosome 36AllAssembled moleculeUnlocalized scaffolds29,064,08026,912,7692,151,31121128,879,82326,728,5122,151,31126,912,76926,912,7692,151,31120200000
Chromosome 37Assembled molecule27,959,306127,784,53127,959,30660
Chromosome 38Assembled molecule26,869,179126,636,06326,869,179170
Chromosome 39Assembled molecule26,235,440125,929,64526,235,440200
Chromosome 40Assembled molecule20,570,595120,375,02620,570,595200
Chromosome 41Assembled molecule19,005,769118,916,26019,005,769270
Chromosome 42Assembled molecule16,791,993116,527,68216,791,993270
Chromosome 43Assembled molecule16,414,262116,234,75016,414,262150
Chromosome 44AllAssembled moleculeUnlocalized scaffolds15,931,58115,641,076290,50521115,885,16115,595,056290,10515,641,07615,641,076290,50520182000
Chromosome 45Assembled molecule15,889,016115,405,45115,889,016260
Chromosome 46Assembled molecule13,965,789113,954,97413,965,789260
Chromosome 47Assembled molecule9,691,32919,538,9469,691,329410
Chromosome 48Assembled molecule4,887,73114,878,2194,887,73130
Chromosome 49Assembled molecule3,963,24413,910,1243,963,244160
Chromosome 50Assembled molecule1,689,21211,684,4121,689,212240
Chromosome XAssembled molecule19,645,116119,624,52719,645,11670
unplacedAssembled molecule212,563,893771211,442,113898,318820